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📄 Abstract
Abstract: Graph foundation models represent a transformative paradigm for learning
transferable representations across diverse graph domains. Recent methods
leverage large language models to unify graph and text modalities into a shared
representation space using contrastive learning. However, systematic
evaluations reveal significant performance degradation at structural boundaries
where distinct topological patterns converge, with accuracy losses exceeding 20
percentage points. This issue arises from a key limitation: current methods
assume all graph structures can be encoded within a single Euclidean space. In
reality, tree structures require hyperbolic geometry to preserve hierarchical
branching, while cyclic patterns depend on spherical geometry for closure
properties. At structural boundaries, nodes experience conflicting geometric
constraints that uniform encoding spaces cannot resolve. This raises a crucial
challenge: \textbf{Can alignment frameworks be designed to respect the
intrinsic geometric diversity of graph structures?} We introduce
\textbf{GraphShaper}, a geometry-aware framework that enhances graph encoding
through multi-geometric specialization. Our approach employs expert networks
tailored to different geometric spaces, dynamically computing fusion weights to
adaptively integrate geometric properties based on local structural
characteristics. This adaptive fusion preserves structural integrity before
alignment with text embeddings. Extensive experiments demonstrate that
GraphShaper achieves 9.47\% accuracy improvements on citation networks and
7.63\% on social networks in zero-shot settings.
Authors (9)
Heng Zhang
Tianyi Zhang
Yuling Shi
Xiaodong Gu
Yaomin Shen
Haochen You
+3 more
Submitted
October 14, 2025
Key Contributions
This paper identifies a key limitation in current graph foundation models: the assumption of a single Euclidean space for encoding, which degrades performance at structural boundaries where different geometries (e.g., hyperbolic for trees, spherical for cycles) are needed. It proposes that alignment frameworks must respect these conflicting geometric constraints to improve transfer learning in text-attributed graphs.
Business Value
Enabling more robust and accurate transfer learning on diverse graph data (e.g., social networks, molecular structures) can unlock new insights and applications in various industries.