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arxiv_ml 95% Match Research Paper GNN Researchers,Machine Learning Engineers,Data Scientists 2 weeks ago

Understanding Generalization in Node and Link Prediction

graph-neural-networks › graph-learning
📄 Abstract

Abstract: Using message-passing graph neural networks (MPNNs) for node and link prediction is crucial in various scientific and industrial domains, which has led to the development of diverse MPNN architectures. Besides working well in practical settings, their ability to generalize beyond the training set remains poorly understood. While some studies have explored MPNNs' generalization in graph-level prediction tasks, much less attention has been given to node- and link-level predictions. Existing works often rely on unrealistic i.i.d.\@ assumptions, overlooking possible correlations between nodes or links, and assuming fixed aggregation and impractical loss functions while neglecting the influence of graph structure. In this work, we introduce a unified framework to analyze the generalization properties of MPNNs in inductive and transductive node and link prediction settings, incorporating diverse architectural parameters and loss functions and quantifying the influence of graph structure. Additionally, our proposed generalization framework can be applied beyond graphs to any classification task under the inductive or transductive setting. Our empirical study supports our theoretical insights, deepening our understanding of MPNNs' generalization capabilities in these tasks.
Authors (3)
Antonis Vasileiou
Timo Stoll
Christopher Morris
Submitted
July 1, 2025
arXiv Category
cs.LG
arXiv PDF

Key Contributions

This work introduces a unified framework to analyze the generalization properties of MPNNs for inductive and transductive node and link prediction. It moves beyond unrealistic i.i.d. assumptions by incorporating diverse architectural parameters and loss functions, and quantifying the influence of graph structure, providing a deeper understanding of why and when MPNNs generalize.

Business Value

Improved reliability and predictability of GNN models in real-world applications like social network analysis, drug discovery, and recommendation systems, leading to better decision-making.